Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX340332: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-146480' containing sample 'Escherichia coli HVH 143 (4-5674999)'
2 ILLUMINA (Illumina HiSeq 2000) runs: 4.6M spots, 927.6M bases, 519Mb downloads

UUID: c8ba3fea-4908-4c5f-aec8-d9c8f9348c01

Design: jumping library

Submitted by: Broad Institute (BI)

Study: E coli UTI Bacteremia

PRJNA186175 • SRP019107 • All experiments • All runs

Sample: Pathogen bacterial, clinical or host-associated sample from Escherichia coli HVH 143 (4-5674999)

SAMN01885788 • SRS399653 • All experiments • All runs

Organism: Escherichia coli HVH 143 (4-5674999)

Library:

Name: Solexa-146480

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 12 attributes...) (hide...)

analysis_type: AssemblyWithReference

gssr_id: 294904.0

library_type: IlluminaStufferlessJump

lsid: broadinstitute.org:bsp.prod.sample:3YT7P

material_type: DNA:DNA Somatic

product_order: PDO-291

product_part_number: P-MCV-0001

project: G30095

research_project: RP-192

root_sample_id: SM-2TD16

sample_id: SM-3YT7P

work_request: 35511

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-05-09 06:21:59.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 2 runs, 4.6M spots, 927.6M bases, 519Mb

Run	# of Spots	# of Bases	Size	Published
SRR958264	2,314,067	467.4M	264.9Mb	2013-08-28
SRR958265	2,277,889	460.1M	254.1Mb	2013-08-28

ID:: 478116

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